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Emma Benjaminson
Emma Benjaminson

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Oct 20, 2020

Docker Best Practices

In a previous post, I introduced the basic ideas behind Docker containers and using them on shared workstations. In this post, I want to build on that discussion by talking about some of the best practices recommended by experts when working with Docker containers. This is going to be a…

6 min read

Docker Best Practices
Docker Best Practices

Oct 19, 2020

Docker Basics

In this post we are going to introduce a useful tool called Docker containers. I came across these recently when I decided to finally move my deep learning model off Google Colab and onto a computer equipped with GPUs.*1 The Biorobotics lab uses Docker containers so that every lab member…

8 min read

Docker Basics
Docker Basics

Aug 13, 2020

The Gumbel-Softmax Distribution

I have been meaning to write this post about the Gumbel-softmax distribution for several months, but I put it on a back burner after I had dug myself into a hole of deep confusion and couldn’t get out. After some encouragement from my advisor, I decided to pick it up…

Machine Learning

9 min read

The Gumbel-Softmax Distribution
The Gumbel-Softmax Distribution

May 12, 2020

Probability and Graph Networks

In my previous post, I presented the motivation for graph networks as described by a paper by DeepMind that I have been reading [1]. We have covered the ideas of relational inductive bias and combinatorial generalization, which describe how we, as humans, think. The DeepMind paper argues that using graph…

Machine Learning

6 min read

Probability and Graph Networks
Probability and Graph Networks

May 12, 2020

Introduction to Graph Networks

In my research I have been learning how neural networks can be used to process graphs as inputs, instead of scalar or vector values. This is a rich area of research and I thought I would start by reading an excellent review/position paper by a group of researchers at DeepMind…

Graph Neural Networks

8 min read

Introduction to Graph Networks
Introduction to Graph Networks

May 12, 2020

Graph Networks — Putting It All Together

This is the third post in a series on graph networks, based on a recent paper by researchers at DeepMind [1]. So far we have discussed the motivation for why graph networks are useful for advancing AI research, and how they work from a probability perspective. …

Machine Learning

8 min read

Graph Networks — Putting It All Together
Graph Networks — Putting It All Together

Nov 22, 2019

Designing DNA Origami Structures

This week I am learning about the fundamentals of designing and building DNA origami structures. I should probably write a post just about cool stuff you can build with DNA origami to get you excited, but in the meantime, check out this cool TED Talk by one of the fathers…

Dna

4 min read

Designing DNA Origami Structures
Designing DNA Origami Structures
Emma Benjaminson

Emma Benjaminson

PhD student in Mechanical Engineering (personal blog: https://sassafras13.github.io/)

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